News Brief

24/10/2012 - Wolfpack Cluster's launched! Check out the User Guide now!

Wikipage of Kevin Ying

Notes:

Overarching pipe

  • Sequencing
  • Alignment
  • Variant calling
  • Variant Refinement

http://www.broadinstitute.org/cancer/cga/

Alignment

bwa bowtie2

cross-contamination of samples during library construction and sequencing

ConTest

Variant calling

muTect and IndelLocator

Annotation